Abbey DA, Funt J, Lurie-Weinberger MN, Thompson DA, Regev A, Myers CL, Berman J. 2014.
YMAP: a pipeline for visualization of copy number variation and loss of heterozygosity in
eukaryotic pathogens. Genome Med. 2014; 6(11):100. https://pubmed.ncbi.nlm.nih.gov/25505934/

This paper introduced YMAP and described it in some detail as it was in 2014.
This paper introduced a full-resolution haplotype map (hapmap) for Candida albicans strains derived from SC5314, built using YMAP, & derived from the array based hapmap of Abbey et al 2011.
YMAP has seen major improvements in security and administrative functions since 2014, though these changes are for the most part invisible to a YMAP user.

Abbey D, Hickman M, Gresham D, Berman J. High-resolution SNP/CGH microarrays reveal
the accumulation of loss of heterozygosity in commonly used Candida albicans strains
G3 (Bethesda). 2011; 1(7):523–530. https://pubmed.ncbi.nlm.nih.gov/22384363/

This paper described the construction of a hapmap for C. albicans strains derived from SC5314, using custom designed microarrays.

At one time I was collecting a list of specific papers that cited YMAP, but for ease of capturing
new citations I will refer you to PubMed and Google Scholar